Yes, each of the vacuum ports on the carbs should be plugged off.
Should not be a problem with the container being open. In fact, if the container was closed it would choke of fuel to the carbs after a minute of running or so, kind of like sucking the soda from a glass bottle without letting any air in.
Did you verify you are getting spark to both cylinders?
You might try:
1) pulling the choke
2) easing the idle screw out a full turn in each carb. Keep careful notes on how many turns you have made in and out from the original setting so you can go back to standard if you want.
3) try giving the carbs a shot of starting fluid to see of the engine will run for a few seconds
4) Verify that the idle needle point has not broken off and got stuck in the idle needle orifice.
5) Do a compression test to verify you have compression and the valves are opening and closing.
I know your earlier post noted you had a mechanic clean your carbs, but how confident are you he actually knew what he was doing? Although these carbs are not particularly complicated, they must be meticulously clean and actually re-assembled per factory specs to run correctly.