Well, at this point you probably don't have much to loose by taking a hammer and tapping on the left end to see if you can get the shaft to move out the right side. If the shaft is really that tweaked, I think opening up the cases is probably warranted as who knows how the selector drum and shift forks look. However, if you can get the shaft out and the other bits of the shift mechanism look in order, putting in a new straight shaft and trying the gear box will tell you a lot before you do anything major.