I just read through the DOHC cam timing and yes, the dots on both cams (1) should align with the arrows on the cam caps (2). However, they do have some pretty specific details on chain slack in differing spots and directions to turn the cams while assembling to ensure proper cam chain tension and the ability to install the gears and guides. For the DOHC, the cam chain tensioner is below the carbs, so that means you will always want to have the most tension on the chain towards the exhaust side of the engine, and all slack (when done assembling) of the chain on the intake side.
Do note though that there is an O mark on the edge of the cam flange (1 in the image) and what appears to be a hole in the face of the cam flange (unmarked in the image but 90 degrees clockwise of the O mark), so make sure you didn't align the hole with the cam cap arrow. Once you think you have it right, just snug up the cam gear bolts and rotate the whole engine over by hand 2 full crankshaft rotations, and realign the crank marks, then both cam marks should also be aligned. If they are not, you likely have something one (or more) tooth off, so just do your best to unbolt that cam gear, get enough slack to reposition the chain and snug it back up and do your rotation check again. This also may require removing/reinstalling the cam chain tensioner a few times as you get it all aligned. Tedious but worth it in the end. One other suggestion while doing this is every time you are removing/installing those cam gear bolts, stuff rags under and around the cam and gear and down the chain opening, then remove them when you have to rotate. It takes extra time, but if you drop the bolt down that hole while trying to remove or install, it'll take even longer to fish it back out. Slow and steady wins the race!
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